Pseudomonas putida BIRD-1, PPUBIRD1_2534

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 337 513 8.0E-59
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 290 513 1.4E-65
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 343 514 1.9E-47
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 353 513 1.33E-43
CDD cd12914 PDC1_DGC_like - - 77 200 3.87625E-25
Gene3D G3DSA:3.30.450.20 PAS domain - - 46 198 1.4E-36
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 348 508 2.8E-44
CDD cd12915 PDC2_DGC_like - - 202 298 2.17294E-20
CDD cd01949 GGDEF IPR000160 GGDEF domain 349 511 9.31671E-51
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 334 515 8.3E-54
Gene3D G3DSA:3.30.450.20 PAS domain - - 201 289 1.3E-21
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 344 513 3.3E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.