Pseudomonas putida BIRD-1, PPUBIRD1_2908 (ttgS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08464 PBP2_DntR_like_2 - - 101 297 3.58755E-81
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 93 295 1.01E-35
Gene3D G3DSA:3.40.190.10 - - - 94 293 3.8E-50
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 91 1.9E-19
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 101 294 7.9E-20
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 47 58 6.5E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 26 37 6.5E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 37 47 6.5E-7
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 11 68 1.0E-15
Gene3D G3DSA:3.40.190.10 - - - 173 269 3.8E-50
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 88 1.7E-18
PANTHER PTHR30118 HTH-TYPE TRANSCRIPTIONAL REGULATOR LEUO-RELATED - - 1 302 3.1E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.