Pseudomonas putida BIRD-1, PPUBIRD1_4958
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppb02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 28 | 259 | 6.6E-101 |
| PANTHER | PTHR30429 | D-METHIONINE-BINDING LIPOPROTEIN METQ | IPR004872 | Lipoprotein NlpA family | 5 | 261 | 2.2E-96 |
| PIRSF | PIRSF002854 | MetQ | IPR004872 | Lipoprotein NlpA family | 1 | 261 | 6.5E-103 |
| CDD | cd13597 | PBP2_lipoprotein_Tp32 | - | - | 25 | 259 | 8.80334E-130 |
| Pfam | PF03180 | NlpA lipoprotein | IPR004872 | Lipoprotein NlpA family | 26 | 261 | 4.8E-101 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 107 | 211 | 6.6E-101 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 25 | 261 | 3.77E-84 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.