Pseudomonas putida HB3267, B479_00840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22888
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0022900 electron transport chain
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02790
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 186 206 3.6E-37
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 275 348 9.9E-12
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 162 183 3.6E-37
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 224 241 3.6E-37
Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 23 104 2.3E-11
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 221 358 2.96E-23
Gene3D G3DSA:1.10.287.90 - IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 38 113 2.6E-77
SUPERFAMILY SSF81464 Cytochrome c oxidase subunit II-like, transmembrane region IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 17 111 4.41E-23
NCBIfam TIGR02866 JCVI: cytochrome c oxidase subunit II IPR014222 Cytochrome c oxidase, subunit II 32 251 1.6E-55
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 255 375 5.5E-28
PANTHER PTHR22888 CYTOCHROME C OXIDASE, SUBUNIT II IPR045187 Cytochrome c/quinol oxidase subunit II 17 260 5.3E-75
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 81 93 3.6E-37
Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPR002429 Cytochrome c oxidase subunit II-like C-terminal 121 240 1.9E-36
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 115 134 3.6E-37
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 206 223 3.6E-37
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 93 113 3.6E-37
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 114 251 2.6E-77
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 116 257 1.58E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.