Pseudomonas putida HB3267, B479_02265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF028103
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13740 | ACT domain | - | - | 3 | 65 | 6.2E-11 |
| Coils | Coil | Coil | - | - | 148 | 168 | - |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 83 | 169 | 4.1E-22 |
| Coils | Coil | Coil | - | - | 102 | 122 | - |
| PANTHER | PTHR34875 | UPF0237 PROTEIN MJ1558 | - | - | 2 | 170 | 4.5E-43 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 1 | 67 | 4.58E-13 |
| PIRSF | PIRSF028103 | GcvR | IPR016867 | Glycine cleavage system transcriptional repressor | 1 | 172 | 3.0E-60 |
| CDD | cd04869 | ACT_GcvR_2 | - | - | 90 | 170 | 2.82523E-24 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 87 | 168 | 7.91E-15 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 1 | 77 | 1.9E-17 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.