Pseudomonas putida HB3267, B479_20800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04675
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04675 DNA ligase N terminus IPR012308 DNA ligase, ATP-dependent, N-terminal 2 161 3.1E-15
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 208 420 4.97E-54
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 424 552 1.3E-27
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 232 420 9.7E-26
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 209 420 9.1E-43
NCBIfam TIGR04120 JCVI: cisplatin damage response ATP-dependent DNA ligase IPR026333 ATP-dependent DNA ligase, PP_1105 family 2 551 0.0
CDD cd07972 OBF_DNA_ligase_Arch_LigB - - 425 549 3.31231E-61
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 441 536 1.7E-8
SUPERFAMILY SSF117018 ATP-dependent DNA ligase DNA-binding domain IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 3 191 7.06E-5
Gene3D G3DSA:1.10.3260.10 - IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 2 183 3.1E-11
PANTHER PTHR45674 DNA LIGASE 1/3 FAMILY MEMBER - - 2 550 3.9E-58
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 425 550 3.43E-28
CDD cd07897 Adenylation_DNA_ligase_Bac1 - - 207 424 1.31942E-113

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.