Pseudomonas putida HB3267, B479_20810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037307
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037307
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08494 DEAD/H associated IPR013701 DEAD/H associated 596 781 4.4E-46
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 15 219 2.1E-23
CDD cd18796 SF2_C_LHR - - 215 361 1.80715E-59
PIRSF PIRSF037307 Lhr-like_helic IPR017170 Lhr-like ATP-dependent RNA helicase, predicted 2 813 0.0
PANTHER PTHR47962 ATP-DEPENDENT HELICASE LHR-RELATED-RELATED - - 7 797 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 234 393 1.7E-18
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 249 348 5.4E-10
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 272 347 3.8E-4
Pfam PF19306 Helicase Lhr winged helix domain IPR045628 Helicase Lhr-like, winged helix domain 390 538 1.8E-60
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 5 204 4.7E-41
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 21 192 1.9E-21
NCBIfam TIGR04121 JCVI: ligase-associated DNA damage response DEXH box helicase IPR026362 DEXH box helicase, DNA ligase-associated 8 810 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 26 360 2.65E-43
CDD cd17922 DEXHc_LHR-like - - 33 201 1.26788E-71
Coils Coil Coil - - 740 760 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.