Pseudomonas putida HB3267, B479_20865

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00633
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00942
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00525
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 30 183 1.31513E-54
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 12 205 2.9E-82
FunFam G3DSA:1.10.340.30:FF:000001 Endonuclease III - - 21 132 5.0E-42
PIRSF PIRSF001435 Nth - - 1 212 2.9E-54
Hamap MF_00942 Endonuclease III [nth]. IPR005759 Endonuclease III 1 209 37.721497
SMART SM00478 endo3end IPR003265 HhH-GPD domain 38 185 1.6E-58
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 21 132 2.9E-82
Pfam PF00633 Helix-hairpin-helix motif IPR000445 Helix-hairpin-helix motif 99 127 1.0E-8
FunFam G3DSA:1.10.1670.10:FF:000001 Endonuclease III - - 126 205 2.5E-34
SMART SM00525 ccc3 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif 186 206 9.7E-5
PANTHER PTHR10359 A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III - - 2 210 6.8E-80
NCBIfam TIGR01083 JCVI: endonuclease III IPR005759 Endonuclease III 5 194 1.8E-84
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 4 208 1.88E-73
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 34 168 4.4E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.