Pseudomonas syringae pv. syringae B728a, Psyr_2125

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc inosine-5'-phosphate biosynthesis II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psb01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc inosine-5'-phosphate biosynthesis I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc adenosine ribonucleotides <i>de novo</i> biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psb01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc inosine-5'-phosphate biosynthesis III InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psb00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.20.200.10:FF:000014 3-carboxy-cis,cis-muconate cycloisomerase - - 1 363 0.0
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 15 303 3.6E-67
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 8 449 1.57E-120
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 1 366 1.8E-115
PRINTS PR00145 Argininosuccinate lyase family signature - - 278 294 1.3E-10
PRINTS PR00145 Argininosuccinate lyase family signature - - 233 257 1.3E-10
SMART SM00998 ADSL_C_2 IPR019468 Adenylosuccinate lyase C-terminal 366 445 6.2E-30
PRINTS PR00145 Argininosuccinate lyase family signature - - 143 163 1.3E-10
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 278 294 3.9E-24
PANTHER PTHR43172 ADENYLOSUCCINATE LYASE - - 4 451 7.4E-120
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 233 260 3.9E-24
CDD cd01597 pCLME - - 8 447 0.0
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 148 166 3.9E-24
FunFam G3DSA:1.10.275.10:FF:000015 3-carboxy-cis,cis-muconate cycloisomerase - - 4 107 8.8E-46
FunFam G3DSA:1.10.40.30:FF:000007 Adenylosuccinate lyase - - 366 447 4.5E-26
PRINTS PR00145 Argininosuccinate lyase family signature - - 102 124 1.3E-10
NCBIfam TIGR02426 JCVI: 3-carboxy-cis,cis-muconate cycloisomerase IPR012789 3-carboxy-cis,cis-muconate cycloisomerase-like 8 351 0.0
Gene3D G3DSA:1.10.40.30 - - - 367 452 4.3E-31
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 103 121 3.9E-24
Pfam PF10397 Adenylosuccinate lyase C-terminus IPR019468 Adenylosuccinate lyase C-terminal 367 444 3.6E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.