Pseudomonas syringae pv. syringae B728a, Psyr_2130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0046279 3,4-dihydroxybenzoate biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046565 3-dehydroshikimate dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb00350 Tyrosine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb00360 Phenylalanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb00130 Ubiquinone and other terpenoid-quinone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07250 HPPD_C_like IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal 438 624 1.55659E-63
SUPERFAMILY SSF51658 Xylose isomerase-like IPR036237 Xylose isomerase-like superfamily 1 268 2.35E-74
Hamap MF_02238 3-dehydroshikimate dehydratase. IPR043700 3-dehydroshikimate dehydratase 1 627 45.723946
CDD cd08342 HPPD_N_like IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal 296 427 3.24815E-24
Pfam PF01261 Xylose isomerase-like TIM barrel IPR013022 Xylose isomerase-like, TIM barrel domain 18 261 2.9E-41
PANTHER PTHR12110 HYDROXYPYRUVATE ISOMERASE - - 1 264 2.8E-92
SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 292 621 4.24E-63
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 289 435 3.7E-39
Gene3D G3DSA:3.20.20.150 - - - 1 269 2.6E-69
Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain 440 564 3.1E-10
Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal - - 293 426 8.8E-31
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 437 633 4.7E-45
Coils Coil Coil - - 64 91 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.