Pseudomonas syringae pv. syringae B728a, Psyr_2131

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF17938 Tetracyclin repressor-like, C-terminal domain IPR041474 HTH-type transcriptional repressor NicS, C-terminal 94 212 4.9E-47
MobiDBLite mobidb-lite consensus disorder prediction - - 1 22 -
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 14 94 7.48E-19
Gene3D G3DSA:1.10.357.10 Tetracycline Repressor, domain 2 - - 22 218 1.2E-63
Pfam PF00440 Bacterial regulatory proteins, tetR family IPR001647 DNA-binding HTH domain, TetR-type 26 72 5.3E-14
SUPERFAMILY SSF48498 Tetracyclin repressor-like, C-terminal domain IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily 92 217 2.67E-35
PRINTS PR00455 TetR bacterial regulatory protein HTH signature IPR001647 DNA-binding HTH domain, TetR-type 47 70 2.2E-6
PRINTS PR00455 TetR bacterial regulatory protein HTH signature IPR001647 DNA-binding HTH domain, TetR-type 26 39 2.2E-6
PANTHER PTHR30328 TRANSCRIPTIONAL REPRESSOR - - 12 217 2.2E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.