Pseudomonas syringae pv. syringae B728a, Psyr_3853

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008615 pyridoxine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10851
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0010181 FMN binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10851
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004733 pyridoxamine-phosphate oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10851
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc pyridoxal 5'-phosphate salvage II (plants) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb00750 Vitamin B6 metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00558 JCVI: pyridoxamine 5'-phosphate oxidase IPR000659 Pyridoxamine 5'-phosphate oxidase 25 215 7.7E-79
PANTHER PTHR10851 PYRIDOXINE-5-PHOSPHATE OXIDASE IPR000659 Pyridoxamine 5'-phosphate oxidase 5 215 5.3E-74
Gene3D G3DSA:2.30.110.10 - IPR012349 FMN-binding split barrel 2 215 2.3E-82
FunFam G3DSA:2.30.110.10:FF:000011 Chromosome 7, whole genome shotgun sequence - - 14 215 6.5E-94
Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal 175 215 9.6E-19
Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. IPR000659 Pyridoxamine 5'-phosphate oxidase 11 215 38.343445
Pfam PF01243 Pyridoxamine 5'-phosphate oxidase IPR011576 Pyridoxamine 5'-phosphate oxidase, putative 46 122 1.3E-26
PIRSF PIRSF000190 Pyd_amn-ph_oxd IPR000659 Pyridoxamine 5'-phosphate oxidase 1 215 1.7E-81
SUPERFAMILY SSF50475 FMN-binding split barrel - - 8 215 8.27E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.