Pseudomonas syringae pv. syringae B728a, Psyr_3858

Gene Feature Overview

Strain	Pseudomonas syringae pv. syringae B728a (Feil et al., 2005) GCF_000012245.1|latest
Locus Tag	Psyr_3858
Name
Replicon	chromosome
Genomic location	4598394 - 4599353 (+ strand)

Cross-References

RefSeq	YP_236926.1
GI	66047085
Entrez	3369393
INSDC	AAY38888.1
NCBI Locus Tag	Psyr_3858
UniParc	UPI000050DA4C
UniProtKB Acc	Q4ZPN4
UniProtKB ID	Q4ZPN4_PSEU2
UniRef100	UniRef100_Q4ZPN4
UniRef50	UniRef50_Q87XQ4
UniRef90	UniRef90_Q87XQ4

Product

Feature Type	CDS
Coding Frame	1
Product Name	nucleoside-specific channel-forming protein, Tsx
Synonyms
Evidence for Translation
Charge (pH 7)	-9.60
Kyte-Doolittle Hydrophobicity Value	-0.400
Molecular Weight (kDa)	35499.0
Isoelectric Point (pI)	4.75

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 32 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018574 (94 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Psyr_3858 Search term: nucleoside-specific channel-forming protein, Tsx

Human Homologs

References