Pseudomonas syringae pv. syringae B728a, Psyr_4678
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 247 | 417 | 2.67E-40 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 369 | 411 | 5.6E-7 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 243 | 414 | 1.36427E-53 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 235 | 420 | 2.6E-58 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 349 | 374 | - |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 242 | 353 | 1.6E-24 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 232 | 416 | 1.4E-46 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 240 | 351 | 9.2E-25 |
| Coils | Coil | Coil | - | - | 334 | 354 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 233 | 417 | 6.2E-51 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.