Pseudomonas syringae pv. syringae B728a, Psyr_4680

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13333
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.420.10:FF:000057 IS150, transposase orfB - - 111 274 1.4E-92
NCBIfam NF033516 NCBIFAM: IS3 family transposase IPR048020 IS3 transposase 3 271 5.0E-101
Pfam PF00665 Integrase core domain IPR001584 Integrase, catalytic core 118 213 1.3E-17
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 110 269 3.79E-32
Pfam PF13276 HTH-like domain IPR025948 HTH-like domain 39 91 9.1E-20
Pfam PF13333 Integrase core domain IPR001584 Integrase, catalytic core 220 273 9.5E-19
PANTHER PTHR46889 TRANSPOSASE INSF FOR INSERTION SEQUENCE IS3B-RELATED - - 16 274 7.2E-66
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 111 275 6.3E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.