Pseudomonas syringae pv. syringae B728a, Psyr_4680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest |
| Locus Tag |
Psyr_4680
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5547340 - 5548176 (+ strand) |
Cross-References
| RefSeq | YP_237745.1 |
| GI | 66047904 |
| Entrez | 3370230 |
| NCBI Locus Tag | Psyr_4680 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
integrase catalytic subunit
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 16.64 |
| Kyte-Doolittle Hydrophobicity Value | -0.463 |
| Molecular Weight (kDa) | 32.2 |
| Isoelectric Point (pI) | 10.02 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 385 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG018859 (26 members) |
| Putative Inparalogs |
4 predicted inparalogs integrase catalytic subunit (Psyr_4616) 100.0% identity integrase catalytic subunit (Psyr_1176) 100.0% identity integrase catalytic subunit (Psyr_0592) 100.0% identity integrase catalytic subunit (Psyr_0273) 100.0% identity |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Psyr_4680
Search term: integrase catalytic subunit
|
Human Homologs
References
No references are associated with this feature.