Pseudomonas syringae pv. syringae B728a, Psyr_4958

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 163 180 -
Pfam PF02861 Clp amino terminal domain, pathogenicity island component IPR004176 Clp, repeat (R) domain 103 126 0.94
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 598 765 4.6E-42
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 677 695 1.5E-32
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 552 769 8.9E-79
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 158 1.3E-41
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 10 855 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 548 843 1.23E-64
Coils Coil Coil - - 434 454 -
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 775 845 1.8E-12
Gene3D G3DSA:1.10.8.60 - - - 772 864 1.4E-9
MobiDBLite mobidb-lite consensus disorder prediction - - 156 180 -
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 599 759 6.3E-10
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 9 126 1.47E-19
Pfam PF02861 Clp amino terminal domain, pathogenicity island component IPR004176 Clp, repeat (R) domain 21 73 1.0E-4
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 14 846 0.0
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 771 864 7.3E-9
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 366 546 2.2E-44
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 568 769 1.55477E-77
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 648 666 1.5E-32
CDD cd00009 AAA - - 204 363 2.4701E-14
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 171 364 8.8E-70
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 365 463 3.7E-30
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 181 497 1.95E-70
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 552 769 1.3E-68
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 225 338 1.2E-8
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 603 621 1.5E-32
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 710 724 1.5E-32
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 220 365 1.5E-9
Coils Coil Coil - - 465 485 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.