Pseudomonas aeruginosa UCBPP-PA14, PA14_06400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 93 298 1.5E-46
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 94 298 1.38E-40
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 5 91 1.0E-22
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 67 1.6E-18
PANTHER PTHR30346 TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED - - 7 298 7.2E-70
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 4 88 2.3E-20
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 115 1.21E-24
CDD cd08412 PBP2_PAO1_like - - 96 294 7.29083E-84
Gene3D G3DSA:3.40.190.10 - - - 167 271 1.5E-45
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 9.8E-8
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 9.8E-8
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 9.8E-8
Gene3D G3DSA:3.40.190.10 - - - 95 290 1.5E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.