Pseudomonas aeruginosa PA7, PSPA7_0236
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa PA7
GCF_000017205.1|latest |
| Locus Tag |
PSPA7_0236
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 249559 - 252606 (+ strand) |
Cross-References
| RefSeq | YP_001345632.1 |
| GI | 152988613 |
| Entrez | 5355839 |
| NCBI Locus Tag | PSPA7_0236 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RND efflux transporter
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -9.33 |
| Kyte-Doolittle Hydrophobicity Value | 0.182 |
| Molecular Weight (kDa) | 112.1 |
| Isoelectric Point (pI) | 5.67 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| TriC | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH, a triclosan-specific efflux protein. [PMID:17720796] | ARO:3003681 | protein homolog model | Strict | 1925.2 | 99.21 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6VEJ | TRANSPORT PROTEIN | 01/02/20 | TriABC transporter from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 4.5 | ELECTRON MICROSCOPY | 99.2 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000156 (999 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSPA7_0236
Search term: RND efflux transporter
|
Human Homologs
References
No references are associated with this feature.