Pseudomonas aeruginosa PA7, PSPA7_0558

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PA7 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd18787 SF2_C_DEAD - - 217 346 3.07428E-48
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 5 364 2.9E-118
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 23 220 7.6E-59
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 230 337 4.1E-25
FunFam G3DSA:3.30.70.330:FF:000254 ATP-dependent RNA helicase DbpA - - 386 458 3.6E-34
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 211 367 6.4E-44
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 256 337 1.9E-27
Gene3D G3DSA:3.30.70.330 - IPR012677 Nucleotide-binding alpha-beta plait domain superfamily 386 457 4.8E-21
CDD cd12501 RRM_EcDbpA_like - - 386 458 4.66258E-37
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 28 195 8.1E-47
Pfam PF03880 DbpA RNA binding domain IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain 386 456 1.3E-23
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 72 357 1.1E-71
CDD cd00268 DEADc - - 15 207 3.31596E-96
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 210 1.7E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.