Pseudomonas aeruginosa PA7, PSPA7_4376
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pap00290 | Valine, leucine and isoleucine biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pap01200 | Carbon metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | IPR001926 | Tryptophan synthase beta chain-like, PALP domain | 20 | 307 | 9.4E-82 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 15 | 310 | 3.6E-97 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 8 | 317 | 4.71E-85 |
| CDD | cd01562 | Thr-dehyd | - | - | 9 | 310 | 5.98425E-108 |
| FunFam | G3DSA:3.40.50.1100:FF:000005 | Threonine dehydratase catabolic | - | - | 53 | 149 | 5.3E-28 |
| PANTHER | PTHR48078 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED | - | - | 15 | 322 | 4.1E-93 |
| NCBIfam | TIGR02991 | JCVI: hydroxyectoine utilization dehydratase EutB | IPR014333 | Ectoine utilization protein EutB | 8 | 320 | 0.0 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 53 | 149 | 3.6E-97 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.