Pseudomonas aeruginosa M18, PAM18_0035

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00038
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other M18 genes in this class
Transcriptional regulators Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 147 161 1.6E-12
CDD cd17535 REC_NarL-like - - 4 109 4.48332E-41
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 177 189 1.6E-12
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2 114 2.2E-31
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 147 203 1.82158E-19
Gene3D G3DSA:3.40.50.2300 - - - 3 207 5.0E-56
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 161 177 1.6E-12
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 4 113 1.1E-29
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 144 201 2.1E-23
PANTHER PTHR43214 TWO-COMPONENT RESPONSE REGULATOR IPR039420 Transcriptional regulatory protein WalR-like 3 205 1.3E-42
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 145 201 9.1E-24
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 145 207 2.21E-17
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 2 163 5.98E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.