Pseudomonas aeruginosa M18, PAM18_0229

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 96 301 3.58E-36
PANTHER PTHR30419 HTH-TYPE TRANSCRIPTIONAL REGULATOR YBHD - - 11 304 3.8E-63
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 45 56 1.6E-5
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 35 45 1.6E-5
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 5 116 5.99E-19
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 24 35 1.6E-5
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 300 1.4E-38
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 7 94 7.7E-21
Gene3D G3DSA:3.40.190.290 - - - 99 309 1.0E-30
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 12 68 4.3E-16
Coils Coil Coil - - 289 309 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.