Pseudomonas aeruginosa M18, PAM18_0445 (gcdH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003995 acyl-CoA dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00073
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00441
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055114 oxidation-reduction process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00441
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.540.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other M18 genes in this class
Amino acid biosynthesis and metabolism Other M18 genes in this class
Fatty acid and phospholipid metabolism Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf00380 Tryptophan metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00071 Fatty acid degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56645 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily 7 238 6.54E-77
ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. IPR006089 Acyl-CoA dehydrogenase, conserved site 345 364 -
Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal 20 132 1.2E-34
CDD cd01151 GCD 7 392 0.0
Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal 239 385 9.5E-28
SUPERFAMILY SSF47203 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal 243 390 3.54E-42
Pfam PF02770 Acyl-CoA dehydrogenase, middle domain IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain 136 227 6.2E-22
Gene3D G3DSA:2.40.110.10 135 239 3.6E-38
Gene3D G3DSA:1.20.140.10 241 393 6.3E-42
PIRSF PIRSF016578 149 391 3.1E-10
Gene3D G3DSA:1.10.540.10 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily 2 134 3.8E-42
PIRSF PIRSF016578 15 94 0.16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.