Pseudomonas aeruginosa M18, PAM18_5564

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other M18 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 IPR001633 EAL domain 697 942 8.0E-119
Gene3D G3DSA:3.30.450.20 272 344 1.4E-12
Gene3D G3DSA:3.30.70.270 525 700 9.3E-54
CDD cd01948 EAL IPR001633 EAL domain 703 942 6.61737E-103
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 701 949 1.6E-102
Pfam PF08447 PAS fold IPR013655 PAS fold-3 317 386 5.0E-17
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 531 689 1.33E-42
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 527 682 2.3E-41
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 556 689 31.383
SMART SM00091 IPR000014 PAS domain 277 343 23.0
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 349 402 13.325
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 399 470 14.031
CDD cd00130 PAS IPR000014 PAS domain 320 390 9.40752E-6
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 470 524 11.411
Coils Coil 691 711 -
SMART SM00267 IPR000160 GGDEF domain 515 687 3.6E-52
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 698 951 80.497
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 392 512 4.54E-24
Gene3D G3DSA:3.30.450.20 401 524 1.2E-30
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 320 395 2.09E-14
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 702 949 1.96E-91
Pfam PF13426 PAS domain IPR000014 PAS domain 412 513 2.9E-16
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 527 685 8.0E-33
CDD cd01949 GGDEF IPR000160 GGDEF domain 527 685 1.14565E-53
Coils Coil 212 264 -
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 324 399 5.4E-8
SMART SM00086 IPR001610 PAC motif 350 393 1.0E-6
Gene3D G3DSA:2.10.70.100 347 395 1.6E-9
SMART SM00091 IPR000014 PAS domain 401 467 2.6E-8
CDD cd00130 PAS IPR000014 PAS domain 410 512 1.64459E-11
Pfam PF00563 EAL domain IPR001633 EAL domain 704 937 1.1E-72
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 398 522 6.5E-20
SMART SM00086 IPR001610 PAC motif 473 515 0.0021

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.