Pseudomonas aeruginosa DK2, PADK2_28960 (uvrD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006298 mismatch repair
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5443
ECO:0000249
sequence similarity evidence used in automatic assertion
11952911
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00580
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006268 DNA unwinding involved in DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01075
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13361
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11070
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01075
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01075
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other DK2 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdk03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdk03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 12 275 1.1E-102
FunFam G3DSA:1.10.10.160:FF:000002 DNA helicase - - 116 189 2.2E-28
PANTHER PTHR11070 UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER IPR000212 DNA helicase, UvrD/REP type 10 647 0.0
FunFam G3DSA:1.10.486.10:FF:000001 DNA helicase - - 384 540 1.1E-73
NCBIfam TIGR01075 JCVI: DNA helicase UvrD IPR005753 DNA helicase, ATP-dependent, UvrD type 8 726 0.0
FunFam G3DSA:3.40.50.300:FF:001201 ATP-dependent DNA helicase UvrD2 - - 282 385 7.0E-34
Gene3D G3DSA:1.10.10.160 - IPR013986 DExx box DNA helicase domain superfamily 116 189 1.1E-102
Pfam PF13361 UvrD-like helicase C-terminal domain IPR014017 UvrD-like DNA helicase, C-terminal 279 618 2.3E-78
Gene3D G3DSA:1.10.486.10 PCRA; domain 4 - - 384 540 0.0
CDD cd18807 SF1_C_UvrD - - 287 616 6.05832E-31
CDD cd17932 DEXQc_UvrD - - 16 285 5.12281E-89
Pfam PF00580 UvrD/REP helicase N-terminal domain IPR014016 UvrD-like helicase, ATP-binding domain 12 273 6.8E-74
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 9 644 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 283 638 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.