Pseudomonas aeruginosa B136-33, G655_02180

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0042255	ribosome assembly	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other B136-33 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psg03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	25	199	4.1E-45
CDD	cd18787	SF2_C_DEAD	-	-	224	353	4.78717E-60
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	467	482	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	521	542	-
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	20	227	8.3E-62
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	218	437	1.6E-50
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	1	605	0.0
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	386	639	-
CDD	cd00268	DEADc	-	-	12	213	1.29601E-99
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	605	639	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	24	102	2.92E-5
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	241	344	3.2E-26
PANTHER	PTHR47959:SF1	ATP-DEPENDENT RNA HELICASE RHLE	-	-	1	605	0.0
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	263	344	1.6E-32
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	1	215	6.6E-76
Hamap	MF_00968	ATP-dependent RNA helicase RhlE [rhlE].	IPR028622	ATP-dependent RNA helicase RhlE	1	566	50.609222
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	80	365	3.4E-73
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	397	420	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.