Pseudomonas aeruginosa B136-33, G655_19640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psg02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 254 | 413 | 4.8E-55 |
| CDD | cd06225 | HAMP | - | - | 186 | 231 | 4.06463E-5 |
| Coils | Coil | Coil | - | - | 217 | 244 | - |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 249 | 405 | 1.9E-46 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 245 | 408 | 6.0E-44 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 181 | 232 | 5.5E-9 |
| Gene3D | G3DSA:6.10.340.10 | - | - | - | 145 | 241 | 8.7E-8 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 414 | 429 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 238 | 411 | 3.6E-56 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 414 | 435 | - |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 119 | 427 | 2.4E-74 |
| Pfam | PF17152 | Periplasmic sensor domain | IPR033417 | Periplasmic sensor domain CHASE8 | 45 | 145 | 7.0E-33 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 250 | 406 | 6.49332E-60 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 254 | 408 | 1.02E-44 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 244 | 411 | 1.3E-41 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 183 | 236 | 9.6E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.