Pseudomonas aeruginosa RP73, M062_26470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SSF82689
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF00924
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 229 | 252 | - |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | IPR010920 | LSM domain superfamily | 916 | 981 | 4.58E-17 |
| Coils | Coil | Coil | - | - | 293 | 327 | - |
| PANTHER | PTHR30347 | POTASSIUM CHANNEL RELATED | - | - | 555 | 1104 | 0.0 |
| FunFam | G3DSA:2.30.30.60:FF:000001 | MscS Mechanosensitive ion channel | - | - | 931 | 979 | 8.3E-17 |
| Gene3D | G3DSA:3.30.70.100 | - | - | - | 984 | 1077 | 4.4E-17 |
| Pfam | PF12795 | Mechanosensitive ion channel porin domain | IPR024393 | Mechanosensitive ion channel MscS, porin domain | 38 | 273 | 6.3E-57 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 250 | 271 | - |
| FunFam | G3DSA:1.10.287.1260:FF:000002 | Potassium efflux system KefA | - | - | 829 | 930 | 4.7E-40 |
| Coils | Coil | Coil | - | - | 75 | 102 | - |
| SUPERFAMILY | SSF82689 | Mechanosensitive channel protein MscS (YggB), C-terminal domain | IPR011066 | Mechanosensitive ion channel MscS, C-terminal | 983 | 1083 | 3.79E-21 |
| Pfam | PF12794 | Mechanosensitive ion channel inner membrane domain 1 | IPR025692 | Mechanosensitive ion channel inner membrane domain 1 | 493 | 812 | 1.4E-101 |
| Pfam | PF00924 | Mechanosensitive ion channel | IPR006685 | Mechanosensitive ion channel MscS | 873 | 1071 | 2.0E-51 |
| Coils | Coil | Coil | - | - | 402 | 429 | - |
| Gene3D | G3DSA:1.10.287.1260 | - | - | - | 829 | 930 | 2.3E-11 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1095 | 1118 | - |
| SUPERFAMILY | SSF82861 | Mechanosensitive channel protein MscS (YggB), transmembrane region | IPR011014 | Mechanosensitive ion channel MscS, transmembrane-2 | 830 | 914 | 2.22E-7 |
| Gene3D | G3DSA:2.30.30.60 | - | IPR023408 | Mechanosensitive ion channel MscS, beta-domain superfamily | 931 | 980 | 1.8E-13 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.