Pseudomonas stutzeri A1501, PST_2682 (srmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas stutzeri A1501
GCF_000013785.1|latest |
| Locus Tag |
PST_2682
|
| Name |
srmB
|
| Replicon | chromosome |
| Genomic location | 2907285 - 2908652 (- strand) |
Cross-References
| RefSeq | YP_001173174.1 |
| GI | 146283021 |
| Entrez | 5095644 |
| NCBI Locus Tag | PST_2682 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ATP-dependent RNA helicase SrmB
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 20.12 |
| Kyte-Doolittle Hydrophobicity Value | -0.279 |
| Molecular Weight (kDa) | 50267.0 |
| Isoelectric Point (pI) | 10.39 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 647 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002174 (538 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PST_2682
Search term: srmB
Search term: ATP-dependent RNA helicase SrmB
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837]
E-value:
7.5e-63
Percent Identity:
38.3
|
References
No references are associated with this feature.