Pseudomonas stutzeri A1501, PST_3687
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 57 | 237 | 2.4E-15 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 11 | 154 | 1.6E-32 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 302 | 465 | 1.5E-48 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 306 | 463 | 5.2E-46 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 301 | 466 | 1.7E-52 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 300 | 466 | 3.1E-59 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 307 | 465 | 6.92222E-65 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 157 | 246 | 3.8E-13 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 264 | 464 | 3.2E-68 |
| Coils | Coil | Coil | - | - | 321 | 341 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 295 | 466 | 6.1E-60 |
| SUPERFAMILY | SSF103190 | Sensory domain-like | IPR029151 | Periplasmic sensor-like domain superfamily | 71 | 165 | 2.04E-5 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 39 | 155 | 6.08025E-22 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 158 | 245 | 2.09765E-12 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 311 | 465 | 3.53E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.