Pseudomonas stutzeri A1501, PST_3741

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd10280
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048038 quinone binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd10280
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd10280
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psa01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa00030 Pentose phosphate pathway 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13360 PQQ-like domain IPR002372 Pyrrolo-quinoline quinone repeat 93 339 1.2E-8
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 277 327 170.0
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 348 382 580.0
MobiDBLite mobidb-lite consensus disorder prediction - - 379 405 -
Gene3D G3DSA:2.140.10.10 - - - 29 430 1.1E-110
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 93 124 0.02
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 208 249 6.5
NCBIfam TIGR03074 JCVI: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family IPR017511 PQQ-dependent membrane bound dehydrogenase 15 667 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 22 46 -
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 151 183 450.0
SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily 33 668 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 499 519 -
PANTHER PTHR32303 QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) - - 24 648 8.0E-56
Pfam PF13360 PQQ-like domain IPR002372 Pyrrolo-quinoline quinone repeat 547 632 3.1E-4
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 590 623 0.15
Gene3D G3DSA:2.140.10.10 - - - 435 668 5.4E-34
CDD cd10280 PQQ_mGDH IPR017511 PQQ-dependent membrane bound dehydrogenase 41 666 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.