Pseudomonas stutzeri A1501, PST_3750

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004520 endodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd09721
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0043571 maintenance of CRISPR repeat elements
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd09721
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00287
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046872 metal ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd09721
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004519 endonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00287
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0051607 defense response to virus
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00287
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03640 JCVI: type I-C CRISPR-associated endonuclease Cas1c IPR019856 CRISPR-associated protein Cas1, DVULG subtype 1 306 0.0
Gene3D G3DSA:3.100.10.20 - IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain 1 45 5.9E-7
PANTHER PTHR34353 CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1 - - 2 306 5.6E-77
Gene3D G3DSA:1.20.120.920 - IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain 47 307 1.7E-77
Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. IPR002729 CRISPR-associated protein Cas1 1 292 21.10622
CDD cd09721 Cas1_I-C IPR019856 CRISPR-associated protein Cas1, DVULG subtype 1 305 0.0
NCBIfam TIGR00287 JCVI: CRISPR-associated endonuclease Cas1 IPR002729 CRISPR-associated protein Cas1 2 302 2.0E-74
Pfam PF01867 CRISPR associated protein Cas1 IPR002729 CRISPR-associated protein Cas1 2 261 2.8E-95

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.