Pseudomonas stutzeri A1501, PST_3877

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00348
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psa01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF48576 Terpenoid synthases IPR008949 Isoprenoid synthase domain superfamily 20 274 8.15E-62
SFLD SFLDS00005 Isoprenoid Synthase Type I - - 34 293 0.0
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase IPR008949 Isoprenoid synthase domain superfamily 14 295 5.7E-67
Pfam PF00348 Polyprenyl synthetase IPR000092 Polyprenyl synthetase 41 263 1.2E-41
PANTHER PTHR43281 FARNESYL DIPHOSPHATE SYNTHASE - - 20 283 2.2E-55
SFLD SFLDG01017 Polyprenyl Transferase Like - - 34 293 0.0
FunFam G3DSA:1.10.600.10:FF:000001 Geranylgeranyl diphosphate synthase - - 13 296 2.5E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.