Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_1409 (mutS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006298 mismatch repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00096
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00096
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140664 ATP-dependent DNA damage sensor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11361
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030983 mismatched DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00096
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psz03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01070 JCVI: DNA mismatch repair protein MutS IPR005748 DNA mismatch repair protein MutS 11 856 0.0
FunFam G3DSA:3.40.1170.10:FF:000001 DNA mismatch repair protein MutS - - 5 125 9.8E-56
Gene3D G3DSA:1.10.1420.10 - - - 390 506 2.4E-111
Pfam PF01624 MutS domain I IPR007695 DNA mismatch repair protein MutS-like, N-terminal 12 123 8.0E-40
Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. IPR005748 DNA mismatch repair protein MutS 11 851 25.133991
SUPERFAMILY SSF48334 DNA repair protein MutS, domain III IPR036187 DNA mismatch repair protein MutS, core domain superfamily 271 568 2.09E-87
Pfam PF05190 MutS family domain IV IPR007861 DNA mismatch repair protein MutS, clamp 431 521 3.4E-28
PIRSF PIRSF037677 Msh6 IPR017261 DNA mismatch repair protein MutS/MSH 3 183 9.8E-28
Gene3D G3DSA:3.40.1170.10 DNA repair protein MutS, domain I IPR016151 DNA mismatch repair protein MutS, N-terminal 3 125 3.4E-46
PIRSF PIRSF037677 Msh6 IPR017261 DNA mismatch repair protein MutS/MSH 210 811 7.2E-125
CDD cd03284 ABC_MutS1 - - 582 795 7.86768E-128
Gene3D G3DSA:1.10.1420.10 - - - 269 563 2.4E-111
SUPERFAMILY SSF53150 DNA repair protein MutS, domain II IPR036678 MutS, connector domain superfamily 118 270 5.1E-43
SUPERFAMILY SSF55271 DNA repair protein MutS, domain I IPR016151 DNA mismatch repair protein MutS, N-terminal 4 119 3.79E-42
SMART SM00534 mutATP5 IPR000432 DNA mismatch repair protein MutS, C-terminal 610 796 2.3E-120
Pfam PF00488 MutS domain V IPR000432 DNA mismatch repair protein MutS, C-terminal 613 799 1.5E-84
Gene3D G3DSA:3.30.420.110 MutS, connector domain IPR036678 MutS, connector domain superfamily 131 265 3.5E-42
Pfam PF05188 MutS domain II IPR007860 DNA mismatch repair protein MutS, connector domain 132 257 6.1E-30
PANTHER PTHR11361 DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER IPR045076 DNA mismatch repair MutS family 15 802 0.0
FunFam G3DSA:1.10.1420.10:FF:000002 DNA mismatch repair protein MutS - - 390 506 9.7E-46
Pfam PF05192 MutS domain III IPR007696 DNA mismatch repair protein MutS, core 274 562 1.8E-37
SMART SM00533 DNAend IPR007696 DNA mismatch repair protein MutS, core 287 594 3.8E-107
FunFam G3DSA:3.40.50.300:FF:000283 DNA mismatch repair protein MutS - - 570 822 6.8E-126
Gene3D G3DSA:6.10.140.430 - - - 829 857 8.2E-12
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 571 813 1.1E-99
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 572 799 6.08E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.