Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3806

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 340 458 1.1E-14
SMART SM00065 IPR003018 GAF domain 182 336 2.6E-8
Pfam PF01590 GAF domain IPR003018 GAF domain 188 325 4.7E-12
SMART SM00086 IPR001610 PAC motif 411 453 1.5E-5
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 345 451 5.06E-21
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 635 883 2.3E-98
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 341 382 10.329
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 469 623 7.85E-40
Coils Coil 135 158 -
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 160 337 1.9E-21
CDD cd01948 EAL IPR001633 EAL domain 638 875 5.91841E-97
CDD cd01949 GGDEF IPR000160 GGDEF domain 465 620 7.20971E-51
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 637 886 2.22E-87
SMART SM00091 IPR000014 PAS domain 14 87 130.0
CDD cd00130 PAS IPR000014 PAS domain 348 450 6.79781E-11
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 410 462 12.421
Gene3D G3DSA:3.30.450.20 339 462 1.1E-25
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 633 887 77.561
Gene3D G3DSA:3.30.70.270 463 634 9.9E-48
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 464 618 2.6E-37
SMART SM00267 IPR000160 GGDEF domain 453 622 1.7E-50
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 460 621 2.4E-36
Pfam PF13426 PAS domain IPR000014 PAS domain 351 451 1.8E-13
SUPERFAMILY SSF55781 188 334 8.94E-20
SMART SM00091 IPR000014 PAS domain 339 405 2.7E-6
SMART SM00052 IPR001633 EAL domain 632 878 8.3E-108
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 492 624 31.671
Pfam PF00563 EAL domain IPR001633 EAL domain 638 873 8.1E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.