Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3823

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004311 farnesyltranstransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00494
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psz01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psz00906 Carotenoid biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psz01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF48576 Terpenoid synthases IPR008949 Isoprenoid synthase domain superfamily 8 288 3.08E-82
Pfam PF00494 Squalene/phytoene synthase IPR002060 Squalene/phytoene synthase 16 274 7.3E-73
FunFam G3DSA:1.10.600.10:FF:000020 Phytoene synthase - - 1 285 6.6E-99
SFLD SFLDS00005 Isoprenoid Synthase Type I - - 7 285 0.0
CDD cd00683 Trans_IPPS_HH IPR033904 Trans-isoprenyl diphosphate synthases, head-to-head 7 277 6.80575E-88
SFLD SFLDG01212 Phytoene synthase like IPR044843 Trans-isoprenyl diphosphate synthases, bacterial-type 7 285 0.0
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase IPR008949 Isoprenoid synthase domain superfamily 2 282 5.8E-79
PANTHER PTHR31480 BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE - - 7 281 8.0E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.