Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3828

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00348
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psz01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psz00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psz01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psz01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDS00005 Isoprenoid Synthase Type I - - 45 304 0.0
SFLD SFLDG01017 Polyprenyl Transferase Like - - 45 304 0.0
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase IPR008949 Isoprenoid synthase domain superfamily 25 306 9.3E-67
FunFam G3DSA:1.10.600.10:FF:000001 Geranylgeranyl diphosphate synthase - - 24 307 4.5E-77
PANTHER PTHR43281 FARNESYL DIPHOSPHATE SYNTHASE - - 31 294 2.5E-55
SUPERFAMILY SSF48576 Terpenoid synthases IPR008949 Isoprenoid synthase domain superfamily 31 285 1.1E-61
Pfam PF00348 Polyprenyl synthetase IPR000092 Polyprenyl synthetase 52 274 1.8E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.