Pseudomonas stutzeri DSM 4166, PSTAA_1400

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006520	cellular amino acid metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01212	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016829	lyase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01212	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psr01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psr01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psr01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psr01230	Biosynthesis of amino acids	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psr01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psr00260	Glycine, serine and threonine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.90.1150.10	Aspartate Aminotransferase, domain 1	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	247	333	6.0E-22
PANTHER	PTHR48097	L-THREONINE ALDOLASE-RELATED	-	-	3	332	4.1E-115
FunFam	G3DSA:3.40.640.10:FF:000030	Low-specificity L-threonine aldolase	-	-	3	246	3.9E-107
PIRSF	PIRSF017617	Thr_aldolase	IPR023603	Low specificity L-threonine aldolase-like	1	337	1.4E-126
SUPERFAMILY	SSF53383	PLP-dependent transferases	IPR015424	Pyridoxal phosphate-dependent transferase	4	333	6.45E-109
Gene3D	G3DSA:3.40.640.10	-	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	1	246	3.9E-90
Pfam	PF01212	Beta-eliminating lyase	IPR001597	Aromatic amino acid beta-eliminating lyase/threonine aldolase	5	283	2.2E-90
NCBIfam	NF041359	NCBIFAM: GntG family PLP-dependent aldolase	IPR023603	Low specificity L-threonine aldolase-like	2	329	0.0
CDD	cd06502	TA_like	-	-	5	331	1.11288E-113

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.