Pseudomonas stutzeri DSM 4166, PSTAA_3949

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 633 888 2.1E-94
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 160 337 2.4E-21
SMART SM00091 pas_2 IPR000014 PAS domain 339 405 2.7E-6
Pfam PF13426 PAS domain IPR000014 PAS domain 351 451 1.7E-12
SMART SM00267 duf1_3 IPR000160 GGDEF domain 453 622 7.0E-51
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 635 886 1.9E-97
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 464 618 2.6E-37
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 460 621 1.1E-35
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 637 886 1.11E-87
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 345 451 5.06E-21
CDD cd01949 GGDEF IPR000160 GGDEF domain 465 620 2.23801E-51
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 469 623 7.85E-40
CDD cd00130 PAS IPR000014 PAS domain 348 450 8.0777E-11
CDD cd01948 EAL IPR001633 EAL domain 638 875 6.50215E-98
Coils Coil Coil - - 135 158 -
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 464 634 3.8E-48
SMART SM00065 gaf_1 IPR003018 GAF domain 182 336 1.9E-8
SMART SM00091 pas_2 IPR000014 PAS domain 14 87 300.0
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 141 878 0.0
SUPERFAMILY SSF55781 GAF domain-like - - 188 334 8.94E-20
Pfam PF00563 EAL domain IPR001633 EAL domain 638 873 8.4E-74
SMART SM00052 duf2_2 IPR001633 EAL domain 632 878 6.3E-108
Gene3D G3DSA:3.30.450.20 PAS domain - - 339 463 2.2E-25
Pfam PF01590 GAF domain IPR003018 GAF domain 188 325 5.0E-12
SMART SM00086 pac_2 IPR001610 PAC motif 411 453 1.5E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 340 458 3.7E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.