Pseudomonas stutzeri DSM 4166, PSTAA_3969

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0010181 FMN binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02151
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02151
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004452 isopentenyl-diphosphate delta-isomerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02151
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psr01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01070 FMN-dependent dehydrogenase IPR000262 FMN-dependent dehydrogenase 8 106 1.7E-7
PANTHER PTHR43665 ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 1 341 1.1E-117
NCBIfam TIGR02151 JCVI: type 2 isopentenyl-diphosphate Delta-isomerase IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 9 341 3.9E-118
Pfam PF01070 FMN-dependent dehydrogenase IPR000262 FMN-dependent dehydrogenase 178 339 1.9E-18
Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 6 345 40.026604
SUPERFAMILY SSF51395 FMN-linked oxidoreductases - - 29 341 2.77E-73
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 4 345 1.4E-117
CDD cd02811 IDI-2_FMN IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 9 337 0.0
SMART SM01240 IMPDH_2 - - 118 345 0.0074
PIRSF PIRSF003314 IPP_isomerase_FMN-dep IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 3 345 1.3E-123

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.