Pseudomonas stutzeri DSM 4166, PSTAA_4056

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0045340 mercury ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00376
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046689 response to mercury ion
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30204
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00376
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 3 115 2.2E-33
Gene3D G3DSA:1.10.1660.10 - - - 2 127 1.6E-29
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 5 126 2.31E-29
NCBIfam TIGR02051 JCVI: Hg(II)-responsive transcriptional regulator IPR011794 Hg(II)-responsive transcriptional regulator 6 129 4.0E-53
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 6 43 5.4E-13
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 17 30 5.3E-19
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 48 108 1.2E-16
CDD cd04783 HTH_MerR1 IPR011794 Hg(II)-responsive transcriptional regulator 5 130 2.24673E-64
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 6 17 5.3E-19
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 5 74 3.6E-24
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 41 61 5.3E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.