Pseudomonas stutzeri DSM 4166, PSTAA_4061

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.490.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019825 oxygen binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.490.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00563 EAL domain IPR001633 EAL domain 474 710 3.9E-65
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 300 453 3.3E-43
CDD cd00130 PAS IPR000014 PAS domain 185 286 3.21411E-9
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 471 728 6.1E-91
CDD cd01948 EAL IPR001633 EAL domain 474 715 2.77375E-85
Gene3D G3DSA:1.10.490.10 Globins IPR012292 Globin/Protoglobin 18 167 2.7E-29
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 166 287 5.06E-19
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 473 722 5.62E-79
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 305 458 2.59E-44
SMART SM00052 duf2_2 IPR001633 EAL domain 468 715 2.5E-96
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 164 728 0.0
CDD cd01949 GGDEF IPR000160 GGDEF domain 301 456 2.36563E-57
SUPERFAMILY SSF46458 Globin-like IPR009050 Globin-like superfamily 21 158 2.73E-15
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 295 458 9.5E-40
SMART SM00267 duf1_3 IPR000160 GGDEF domain 289 458 6.1E-60
Pfam PF11563 Protoglobin IPR044398 Globin-sensor domain 18 165 3.7E-28
SMART SM00091 pas_2 IPR000014 PAS domain 174 241 4.1E-6
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 295 470 3.1E-53
Gene3D G3DSA:3.30.450.20 PAS domain - - 168 285 6.5E-30
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 297 455 6.2E-39
Pfam PF08447 PAS fold IPR013655 PAS fold-3 197 276 1.4E-13
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 170 294 3.8E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.