Pseudomonas stutzeri CCUG 29243, A458_02085

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0010181 FMN binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF003314
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01070
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004452 isopentenyl-diphosphate delta-isomerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF003314
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF003314
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psc00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc <i>trans, trans</i>-farnesyl diphosphate biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc methylerythritol phosphate pathway II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc mevalonate pathway III (archaea) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psc01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc <i>all-trans</i>-farnesol biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc mevalonate pathway II (archaea) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc isoprene biosynthesis II (engineered) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc bisabolene biosynthesis (engineered) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc mevalonate pathway I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02151 JCVI: type 2 isopentenyl-diphosphate Delta-isomerase IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 9 341 1.1E-116
SUPERFAMILY SSF51395 FMN-linked oxidoreductases - - 29 343 2.89E-70
PIRSF PIRSF003314 IPP_isomerase_FMN-dep IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 3 345 1.5E-121
CDD cd02811 IDI-2_FMN IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 9 337 0.0
Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 6 346 39.806145
Pfam PF01070 FMN-dependent dehydrogenase IPR000262 FMN-dependent dehydrogenase 178 339 3.3E-18
PANTHER PTHR43665 ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent 1 341 2.2E-116
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 4 345 2.0E-114

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.