Pseudomonas stutzeri DSM 10701, PSJM300_01190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 530 685 4.5E-41
CDD cd01949 GGDEF IPR000160 GGDEF domain 530 688 1.91906E-52
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 533 698 8.2E-51
Gene3D G3DSA:3.30.450.20 PAS domain - - 398 532 1.4E-29
SMART SM00086 pac_2 IPR001610 PAC motif 353 396 5.8E-8
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 700 952 6.7E-103
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 409 525 2.3E-17
CDD cd01948 EAL IPR001633 EAL domain 706 946 1.37383E-113
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 701 952 1.0E-95
SMART SM00267 duf1_3 IPR000160 GGDEF domain 518 690 4.6E-55
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 287 398 6.81E-13
CDD cd00130 PAS IPR000014 PAS domain 413 515 6.40735E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 409 516 2.27E-22
Gene3D G3DSA:3.30.450.20 PAS domain - - 272 392 2.3E-25
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 383 951 0.0
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 528 688 2.6E-32
SMART SM00086 pac_2 IPR001610 PAC motif 476 518 0.044
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 331 401 9.1E-6
SMART SM00052 duf2_2 IPR001633 EAL domain 700 946 4.6E-120
SMART SM00091 pas_2 IPR000014 PAS domain 404 470 5.7E-8
Pfam PF00563 EAL domain IPR001633 EAL domain 706 941 3.0E-76
Pfam PF08447 PAS fold IPR013655 PAS fold-3 330 389 4.0E-13
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 534 691 2.67E-43
Coils Coil Coil - - 694 714 -
Pfam PF13426 PAS domain IPR000014 PAS domain 415 516 6.5E-12
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 705 951 4.32E-92

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.