Pseudomonas stutzeri DSM 10701, PSJM300_01195

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psj03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.230 - IPR037026 Vgr protein, OB-fold domain superfamily 375 481 4.7E-40
NCBIfam TIGR01646 JCVI: type VI secretion system tip protein VgrG IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 21 529 8.2E-124
MobiDBLite mobidb-lite consensus disorder prediction - - 338 360 -
Pfam PF04717 Type VI secretion system/phage-baseplate injector OB domain IPR006531 Gp5/Type VI secretion system Vgr protein, OB-fold domain 408 478 1.1E-12
NCBIfam TIGR03361 JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 9 546 0.0
Pfam PF05954 Phage tail baseplate hub (GPD) - - 28 320 3.6E-77
SUPERFAMILY SSF69279 Phage tail proteins - - 183 384 4.25E-39
SUPERFAMILY SSF69279 Phage tail proteins - - 10 183 3.91E-58
SUPERFAMILY SSF69255 gp5 N-terminal domain-like - - 384 477 4.45E-30
Gene3D G3DSA:3.55.50.10 - - - 94 187 4.0E-86
Gene3D G3DSA:2.30.110.50 - - - 18 322 4.0E-86
SUPERFAMILY SSF69349 Phage fibre proteins - - 467 649 2.9E-39
Gene3D G3DSA:4.10.220.110 - - - 219 278 4.0E-86
PANTHER PTHR32305 - - - 31 539 7.2E-78

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.