Pseudomonas stutzeri DSM 10701, PSJM300_13705

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00420
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00420
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00037 LacR bacterial regulatory protein HTH signature IPR001034 DeoR-type HTH domain 38 56 7.1E-12
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 51 1.4E-9
CDD cd00090 HTH_ARSR IPR011991 ArsR-like helix-turn-helix domain 5 55 1.51397E-4
SMART SM00420 deor2 IPR001034 DeoR-type HTH domain 6 58 3.1E-20
Pfam PF08220 DeoR-like helix-turn-helix domain IPR001034 DeoR-type HTH domain 6 61 4.7E-20
PANTHER PTHR30363 HTH-TYPE TRANSCRIPTIONAL REGULATOR SRLR-RELATED - - 4 246 7.4E-58
Gene3D G3DSA:3.30.750.70 - - - 69 129 7.7E-8
PRINTS PR00037 LacR bacterial regulatory protein HTH signature IPR001034 DeoR-type HTH domain 24 38 7.1E-12
FunFam G3DSA:1.10.10.10:FF:000081 DeoR/GlpR family transcriptional regulator - - 2 57 2.2E-28
SMART SM01134 DeoRC_2 - - 72 232 2.9E-68
Pfam PF00455 DeoR C terminal sensor domain IPR014036 DeoR C-terminal sensor domain 75 230 9.0E-51
SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like IPR037171 NagB/RpiA transferase-like 73 231 9.9E-29
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 68 6.3E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.