Pseudomonas stutzeri DSM 10701, PSJM300_14160

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 273 319 8.06E-9
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 243 318 9.5E-21
Gene3D G3DSA:1.10.10.60 - - - 217 278 5.6E-17
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 221 271 5.38E-11
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 237 320 2.3E-26
Pfam PF06719 AraC-type transcriptional regulator N-terminus IPR009594 Transcription regulator HTH, AraC, N-terminal 57 208 9.4E-54
Gene3D G3DSA:1.10.10.60 - - - 279 325 1.3E-9
PANTHER PTHR43436 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 35 326 8.0E-106

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.