Pseudomonas stutzeri DSM 10701, PSJM300_17065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55781 GAF domain-like - - 182 320 3.43E-18
SMART SM00267 duf1_3 IPR000160 GGDEF domain 445 614 1.3E-54
CDD cd00130 PAS IPR000014 PAS domain 340 442 5.10757E-9
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 629 878 6.41E-89
CDD cd00130 PAS IPR000014 PAS domain 41 103 0.00979012
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 153 329 4.5E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 337 443 1.19E-19
SMART SM00091 pas_2 IPR000014 PAS domain 24 87 32.0
Pfam PF01590 GAF domain IPR003018 GAF domain 181 316 9.2E-12
SMART SM00086 pac_2 IPR001610 PAC motif 403 445 1.9E-4
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 456 610 2.0E-39
Pfam PF00563 EAL domain IPR001633 EAL domain 630 865 2.5E-72
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 456 626 4.2E-49
Pfam PF13426 PAS domain IPR000014 PAS domain 343 443 1.2E-13
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 330 451 9.0E-17
CDD cd01949 GGDEF IPR000160 GGDEF domain 457 612 2.50508E-53
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 452 613 2.0E-36
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 627 879 2.3E-99
SMART SM00052 duf2_2 IPR001633 EAL domain 624 870 1.1E-113
CDD cd01948 EAL IPR001633 EAL domain 630 867 2.94192E-99
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 249 871 0.0
SMART SM00065 gaf_1 IPR003018 GAF domain 179 328 2.0E-7
SMART SM00091 pas_2 IPR000014 PAS domain 331 397 6.1E-6
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 461 615 2.12E-40
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 625 880 2.2E-95
Gene3D G3DSA:3.30.450.20 PAS domain - - 330 455 1.1E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.