Pseudomonas stutzeri DSM 10701, PSJM300_17065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00563 EAL domain IPR001633 EAL domain 630 865 2.5E-73
Pfam PF01590 GAF domain IPR003018 GAF domain 181 316 8.6E-12
Gene3D G3DSA:3.30.70.270 455 626 4.7E-49
SMART SM00091 IPR000014 PAS domain 331 397 6.1E-6
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 625 879 78.174
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 627 877 3.2E-101
CDD cd00130 PAS IPR000014 PAS domain 340 442 4.21543E-9
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 152 329 5.4E-17
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 402 454 12.421
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 461 615 2.12E-40
SMART SM00267 IPR000160 GGDEF domain 445 614 1.3E-54
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 629 878 6.41E-89
SUPERFAMILY SSF55781 182 320 3.43E-18
SMART SM00065 IPR003018 GAF domain 179 328 2.0E-7
Pfam PF13426 PAS domain IPR000014 PAS domain 343 443 2.4E-14
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 330 451 2.6E-17
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 452 613 5.8E-37
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 484 616 31.566
SMART SM00052 IPR001633 EAL domain 624 870 1.1E-113
CDD cd00130 PAS IPR000014 PAS domain 41 103 0.00808008
CDD cd01949 GGDEF IPR000160 GGDEF domain 457 612 2.06752E-53
SMART SM00091 IPR000014 PAS domain 24 87 32.0
SMART SM00086 IPR001610 PAC motif 403 445 1.9E-4
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 456 610 1.2E-39
Gene3D G3DSA:3.30.450.20 330 454 9.3E-26
CDD cd01948 EAL IPR001633 EAL domain 630 867 2.42805E-99
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 329 374 11.81
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 337 443 1.19E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.