Pseudomonas stutzeri RCH2, Psest_0405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004311 farnesyltranstransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00494
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh00906 Carotenoid biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00494 Squalene/phytoene synthase IPR002060 Squalene/phytoene synthase 16 275 5.9E-72
PANTHER PTHR31480 BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE - - 9 281 8.4E-60
SUPERFAMILY SSF48576 Terpenoid synthases IPR008949 Isoprenoid synthase domain superfamily 8 288 4.68E-81
SFLD SFLDG01212 Phytoene synthase like IPR044843 Trans-isoprenyl diphosphate synthases, bacterial-type 8 285 0.0
FunFam G3DSA:1.10.600.10:FF:000020 Phytoene synthase - - 1 285 5.2E-98
CDD cd00683 Trans_IPPS_HH IPR033904 Trans-isoprenyl diphosphate synthases, head-to-head 7 277 1.16023E-87
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase IPR008949 Isoprenoid synthase domain superfamily 3 282 8.6E-77
SFLD SFLDS00005 Isoprenoid Synthase Type I - - 8 285 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.